About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides17628MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
Paelopatides17629-
Paelopatides17630-
Paelopatides17631NETRIN RECEPTOR UNC5
Paelopatides17632SLR5058 PROTEIN
Paelopatides17633-
Paelopatides17634-
Paelopatides17635GAG-RELATED PROTEIN
Paelopatides17636-
Paelopatides17637CYTOCHROME C
Paelopatides17638COILED-COIL DOMAIN-CONTAINING PROTEIN 89
Paelopatides17639GH17980P-RELATED
Paelopatides17640-
Paelopatides17641HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides17642PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides17643F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides17644BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides17645ENDONUCLEASE
Paelopatides17646C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides17647PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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