About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18494-
Paelopatides18495PROTEIN CBG23806
Paelopatides18496ENDONUCLEASE-RELATED
Paelopatides18497L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides18498-
Paelopatides18499ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18500REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18501-
Paelopatides18502-
Paelopatides18503CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18504PROTEIN CBG26694
Paelopatides18505LON PROTEASE
Paelopatides18506-
Paelopatides18507-
Paelopatides18508REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18509DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Paelopatides18510-
Paelopatides18511OS05G0310600 PROTEIN
Paelopatides18512REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18513-
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