About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18799NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides18800ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides18801-
Paelopatides18802CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18803CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18804VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN
Paelopatides18805CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18806GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides18808PROTEIN CBG26694
Paelopatides18809-
Paelopatides18810-
Paelopatides18811REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18812NOTCH LIGAND FAMILY MEMBER
Paelopatides18813-
Paelopatides18814-
Paelopatides18815PROTEIN CBG26694
Paelopatides18816PROTEIN CBG26694
Paelopatides18817TYROSINE-PROTEIN KINASE
Paelopatides18818-
Paelopatides18821-
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