About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18822-
Paelopatides18823MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Paelopatides18824-
Paelopatides18825ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides18826PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides18827PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides18828ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides18829ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides18830ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18831-
Paelopatides18832CS DOMAIN-CONTAINING PROTEIN
Paelopatides18833-
Paelopatides18834GLUTATHIONE S-TRANSFERASE
Paelopatides18835-
Paelopatides18836ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18837METHIONINE AMINOPEPTIDASE
Paelopatides18839CALSYNTENIN
Paelopatides18840PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides18841-
Paelopatides18842-
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