About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18866ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18867FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides18868ZGC:195170
Paelopatides18869-
Paelopatides18870ENDONUCLEASE-RELATED
Paelopatides18871-
Paelopatides18872ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18873THAP DOMAIN-CONTAINING
Paelopatides18874GEMIN2
Paelopatides18875GOLGI SNARE BET1-RELATED
Paelopatides18876DOWN REGULATED IN RENAL CARCINOMA 1/TU3A
Paelopatides18877DIMETHYLANILINE MONOOXYGENASE
Paelopatides18878MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
Paelopatides18881RETROTRANSPOSON
Paelopatides18882PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides18883FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides18884PROTEIN CBG26694
Paelopatides18885-
Paelopatides18886L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides18887DUF3504 DOMAIN-CONTAINING PROTEIN
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