About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19793TWO PORE CALCIUM CHANNEL PROTEIN 2
Paelopatides19794PROTEIN CBG26694
Paelopatides19795TWO PORE CALCIUM CHANNEL PROTEIN 2
Paelopatides19796PROTEIN CBG26694
Paelopatides19797SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides19798SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides19799ENDONUCLEASE-RELATED
Paelopatides19800TRANSMEMBRANE PROTEIN 168
Paelopatides19801RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides19802-
Paelopatides19803MIP04163P
Paelopatides19804PROTEIN CBG26694
Paelopatides19805-
Paelopatides19806ENZYMATIC POLYPROTEIN-RELATED
Paelopatides19807-
Paelopatides19808-
Paelopatides19809HSC70-INTERACTING PROTEIN
Paelopatides19810PROTEIN CBG26694
Paelopatides19811SERINE/THREONINE-PROTEIN KINASE
Paelopatides19812-
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