About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20473-
Paelopatides20474REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20475REVERSE TRANSCRIPTASES
Paelopatides20476-
Paelopatides20477ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides20478SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20479SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20480ZINC FINGER AND SCAN DOMAIN-CONTAINING
Paelopatides20481CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20482TOL-PAL SYSTEM PROTEIN TOLA
Paelopatides20483SYNOVIAL SARCOMA, X MEMBER
Paelopatides20484TETRATRICOPEPTIDE REPEAT PROTEIN 13
Paelopatides20485TETRATRICOPEPTIDE REPEAT PROTEIN 13
Paelopatides20486NUCLEAR PROTEIN SKIP-RELATED
Paelopatides20489INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides20490ENZYMATIC POLYPROTEIN-RELATED
Paelopatides20491SCAVENGER RECEPTOR CLASS F
Paelopatides20492FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides20493KINESIN-RELATED
Paelopatides20494WD40 REPEAT PF20
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