About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides20407-
Paelopatides20408-
Paelopatides20409FAM124 DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides20410SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Paelopatides20411REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides20412PROTEIN ZERKNUELLT 1-RELATED
Paelopatides20413COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
Paelopatides20414TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides20415-
Paelopatides20416GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides20417EXPRESSED PROTEIN
Paelopatides20418-
Paelopatides20419ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1
Paelopatides20420-
Paelopatides20421-
Paelopatides20422GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
Paelopatides20423-
Paelopatides20424PROTEIN CBG26694
Paelopatides20425-
Paelopatides20426NETRIN RECEPTOR UNC5
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