About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21042UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN
Paelopatides21043MONOCARBOXYLATE TRANSPORTER
Paelopatides21044-
Paelopatides21045PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
Paelopatides21046-
Paelopatides21047TRANSPOSASE, PUTATIVE-RELATED
Paelopatides21048REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21049TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT
Paelopatides21050-
Paelopatides21051OVOCHYMASE-RELATED
Paelopatides21052ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides21053PROTEIN CBG26694
Paelopatides21054CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21055-
Paelopatides21056PROTEIN CBG26694
Paelopatides21057AVIDIN-RELATED
Paelopatides21058-
Paelopatides21059-
Paelopatides21060S-ANTIGEN PROTEIN
Paelopatides21061BROMODOMAIN CONTAINING PROTEIN
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