About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21309ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21310-
Paelopatides21311HYR DOMAIN-CONTAINING PROTEIN
Paelopatides21312-
Paelopatides21313HOMEOBOX PROTEIN
Paelopatides21314REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21315RENTINAL DEGENERATION 3-LIKE
Paelopatides21316PROTEIN BRICK1
Paelopatides21317TRNA PSEUDOURIDINE SYNTHASE D
Paelopatides21318REVERSE TRANSCRIPTASES
Paelopatides21319REVERSE TRANSCRIPTASES
Paelopatides21320F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21321PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides21322PROTEIN CBG26694
Paelopatides21323POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides21324ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21325TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides21326G PROTEIN-COUPLED RECEPTOR
Paelopatides21327OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides21328CXC DOMAIN-CONTAINING PROTEIN-RELATED
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