About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21248-
Paelopatides21249FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides21250DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides21251PROTEIN CBG26694
Paelopatides21252PROTEIN CBG26694
Paelopatides21253GLUCOSYLCERAMIDASE
Paelopatides21254LEUCINE ZIPPER PROTEIN 4-RELATED
Paelopatides21255LEUCINE ZIPPER PROTEIN 4-RELATED
Paelopatides21256ZINC FINGER AND SCAN DOMAIN-CONTAINING
Paelopatides21257TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides21258ENZYMATIC POLYPROTEIN-RELATED
Paelopatides21259-
Paelopatides21260ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2
Paelopatides21261PROTEIN SCAI
Paelopatides21262PROTEIN SCAI
Paelopatides21263EPH RECEPTOR A5
Paelopatides21264-
Paelopatides21265-
Paelopatides21266-
Paelopatides21267ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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