About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21289MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
Paelopatides21290MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
Paelopatides21291REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21292ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21293ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides21294FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides21295FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides21296REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21297ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Paelopatides21298SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides21299-
Paelopatides21300REVERSE TRANSCRIPTASES
Paelopatides21301PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides21302-
Paelopatides21303REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides2130415-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)]
Paelopatides21305-
Paelopatides21306PROTEIN, PUTATIVE-RELATED
Paelopatides21307PROTEIN CBG26694
Paelopatides21308PROTEIN CBG26694
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