About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21655FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides21656ACROSIN-RELATED
Paelopatides21657SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8
Paelopatides21658-
Paelopatides21659XANTHINE DEHYDROGENASE
Paelopatides21660-
Paelopatides21661-
Paelopatides21662ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides21663-
Paelopatides21664MDM2-BINDING PROTEIN
Paelopatides21665-
Paelopatides21669REVERSE TRANSCRIPTASES
Paelopatides21670REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides21671-
Paelopatides21672MITOCHONDRIAL RIBOSOMAL PROTEIN S5
Paelopatides21673UBIQUITIN-ACTIVATING ENZYME E1
Paelopatides21674CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides21675D-TYROSYL-TRNA TYR DEACYLASE
Paelopatides21676CONTACTIN 5
Paelopatides21677-
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