About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides21888ENDONUCLEASE-RELATED
Paelopatides21889CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Paelopatides21890-
Paelopatides21891CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Paelopatides21892ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides21893-
Paelopatides21894TRNA (GUANINE-9-) METHYLTRANSFERASE
Paelopatides21895CWF19, CELL CYCLE CONTROL PROTEIN
Paelopatides21896N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Paelopatides21897REGULATOR OF G-PROTEIN SIGNALING PROTEIN-LIKE
Paelopatides21898REGULATOR OF G-PROTEIN SIGNALING PROTEIN-LIKE
Paelopatides21899EPM2A-INTERACTING PROTEIN 1
Paelopatides21900DNA HELICASE RECQ FAMILY MEMBER
Paelopatides21901EPM2A-INTERACTING PROTEIN 1
Paelopatides21902G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides21903-
Paelopatides21904LYR MOTIF-CONTAINING PROTEIN 9
Paelopatides21905BUCENTAUR RELATED
Paelopatides21906CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides21907IP13529P
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