About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides22294ENZYMATIC POLYPROTEIN-RELATED
Paelopatides22295PROTEIN CBG26694
Paelopatides22297REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22298PROTEIN CBG26694
Paelopatides22299-
Paelopatides22300RIBOSOMAL RNA METHYLTRANSFERASE
Paelopatides22301EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED
Paelopatides22302SAM-DEPENDENT METHYLTRANSFERASE
Paelopatides22303-
Paelopatides22304BUCENTAUR RELATED
Paelopatides22305RAS LIKE FAMILY 10 MEMBER B-RELATED
Paelopatides22306SI:CH211-196P9.1-RELATED
Paelopatides22307REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides22308TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides22309PROTEIN CBG24663
Paelopatides22310TRANSPOSASE, PUTATIVE-RELATED
Paelopatides22311DEATH DOMAIN-CONTAINING PROTEIN CRADD
Paelopatides22312DISKS LARGE HOMOLOG 5
Paelopatides22313DISKS LARGE HOMOLOG 5
Paelopatides22314DISKS LARGE HOMOLOG 5
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