About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23343-
Paelopatides23344-
Paelopatides23345AP ENDONUCLEASE
Paelopatides23346MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Paelopatides23347WNT RELATED
Paelopatides23348PROTEIN NEDD1
Paelopatides23349ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23350ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23351PROTEIN PHOSPHATASE METHYLESTERASE-1 RELATED
Paelopatides23352PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides23353THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9
Paelopatides23354ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23355ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23356ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23357-
Paelopatides23359EPM2A-INTERACTING PROTEIN 1
Paelopatides23360EPM2A-INTERACTING PROTEIN 1
Paelopatides23361-
Paelopatides23364MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L51
Paelopatides23365-
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