About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23366-
Paelopatides23367REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23368-
Paelopatides23369-
Paelopatides23370MULTICOPPER OXIDASE-RELATED
Paelopatides23371-
Paelopatides23372-
Paelopatides23373-
Paelopatides23374CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides23375PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides23376METHYL-CPG-BINDING PROTEIN
Paelopatides23377METHYL-CPG BINDING PROTEIN, MBD
Paelopatides23378XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides23379PROTEIN CBG26694
Paelopatides23380PROTEIN CBG26694
Paelopatides23381RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides23382GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL
Paelopatides23383-
Paelopatides23384TRANSPOSON
Paelopatides23385-
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