About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23777LITHOSTATHINE
Paelopatides23778-
Paelopatides23779SIMILAR TO CHROMOSOME 3 OPEN READING FRAME 20
Paelopatides23780GUANYLATE KINASE-RELATED
Paelopatides23782-
Paelopatides23783N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides23784SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides23785ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides23786PROTEASE M1 ZINC METALLOPROTEASE
Paelopatides23787GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides23788-
Paelopatides23789CYTOCHROME P450 FAMILY 4
Paelopatides23790GAG-RELATED PROTEIN
Paelopatides23791PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides23792-
Paelopatides23793REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23794-
Paelopatides23795REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides23796ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23797ENZYMATIC POLYPROTEIN-RELATED
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