About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides23798TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides23799-
Paelopatides23800T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides23801ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23802EPM2A-INTERACTING PROTEIN 1
Paelopatides23803XAA-PRO AMINOPEPTIDASE 1
Paelopatides23804-
Paelopatides23806-
Paelopatides23807ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Paelopatides23808ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1
Paelopatides23809LITHOSTATHINE
Paelopatides23810ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23811PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides23812RETROTRANSPOSON
Paelopatides23813-
Paelopatides23814POLY A POLYMERASE CID PAP -RELATED
Paelopatides23815POLY A POLYMERASE CID PAP -RELATED
Paelopatides23816ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides23817ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides23818L1 TRANSPOSABLE ELEMENT-RELATED
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