About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24092ATP SYNTHASE GAMMA-RELATED
Paelopatides24093METHIONINE SYNTHASE
Paelopatides24094SYNTAXIN
Paelopatides24095SCAVENGER RECEPTOR CLASS F
Paelopatides24096-
Paelopatides24097TRANSPOSABLE ELEMENT-RELATED
Paelopatides24101-
Paelopatides24102TRANSPOSON
Paelopatides24103-
Paelopatides24104ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24105-
Paelopatides24106TYROSINE-PROTEIN KINASE
Paelopatides24107-
Paelopatides24108-
Paelopatides24109F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides24110PROTEIN CBG26694
Paelopatides24111CUBILIN-LIKE PROTEIN
Paelopatides24112GAG-RELATED PROTEIN
Paelopatides24113CWF19, CELL CYCLE CONTROL PROTEIN
Paelopatides24114CWF19, CELL CYCLE CONTROL PROTEIN
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