About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24139-
Paelopatides24140PROTEIN CBG26694
Paelopatides24142-
Paelopatides24143PROTEIN CBG26694
Paelopatides24144FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides24145-
Paelopatides24146-
Paelopatides24147-
Paelopatides24148ZGC:195170
Paelopatides24149PROTEIN CBG26694
Paelopatides24150-
Paelopatides24151-
Paelopatides24152F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24153NATRIURETIC PEPTIDE RECEPTOR 3-RELATED
Paelopatides24154-
Paelopatides24155EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1
Paelopatides24156PROTEIN CBG26694
Paelopatides24157N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides24158SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24159DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
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