About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24203ENDONUCLEASE-RELATED
Paelopatides24204-
Paelopatides24205DOPAMINE BETA HYDROXYLASE RELATED
Paelopatides24206RETROTRANSPOSON
Paelopatides24207RETROTRANSPOSON
Paelopatides24208PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides24209ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24210-
Paelopatides24211DUF853 DOMAIN-CONTAINING PROTEIN
Paelopatides24212-
Paelopatides24213SI:CH211-196P9.1-RELATED
Paelopatides24214NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides24215CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24216CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24221GTP-BINDING
Paelopatides24222SYNAPTIC VESICLE GLYCOPROTEIN 2
Paelopatides24223TRANSPOSABLE ELEMENT-RELATED
Paelopatides24224-
Paelopatides24225REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24226-
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