About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24438ENDONUCLEASE-RELATED
Paelopatides24439CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides24440ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24441REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24442ZINC FINGER PROTEIN
Paelopatides24443-
Paelopatides24444REVERSE TRANSCRIPTASES
Paelopatides24445THIOREDOXIN PEROXIDASE
Paelopatides24448-
Paelopatides24449SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24450EXS-RELATED PROTEIN
Paelopatides24451-
Paelopatides24452-
Paelopatides24453MEMBRALIN/KINETOCHORE PROTEIN NUF2
Paelopatides24454OVOCHYMASE-RELATED
Paelopatides24455-
Paelopatides24456SYNTROPHIN
Paelopatides24459PARANEOPLASTIC ANTIGEN
Paelopatides24460PROTEIN CBG26694
Paelopatides24461SI:CH211-108C17.2-RELATED-RELATED
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