About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24462-
Paelopatides24463LITHOSTATHINE
Paelopatides24464MUCIN 4-RELATED
Paelopatides24465MUCIN 4-RELATED
Paelopatides24466REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24467ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides24468ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides24469-
Paelopatides24470BUCENTAUR RELATED
Paelopatides24471-
Paelopatides24472TRANSPOSON
Paelopatides24473PEPTIDASE
Paelopatides24474HEH2P
Paelopatides24475L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides24476SULFATE TRANSPORTER
Paelopatides24477HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides24478SULFATE TRANSPORTER
Paelopatides24479TRANSMEMBRANE PROTEIN 187
Paelopatides24480VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Paelopatides24481VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
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