About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24947PROTEIN CBG26694
Paelopatides24948NECTIN-RELATED
Paelopatides249513'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
Paelopatides24952MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides24953ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides24954HISTIDINE-RICH GLYCOPROTEIN
Paelopatides24955CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides24956-
Paelopatides24957CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides24958-
Paelopatides24959-
Paelopatides24960ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24961ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides24962-
Paelopatides24963FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides24964UNCHARACTERIZED
Paelopatides24965NY-REN-41 ANTIGEN L15 -RELATED
Paelopatides24966BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides24967ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
Paelopatides24968-
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