About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24969-
Paelopatides24970REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24971PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides24972PROTEIN CBG26694
Paelopatides24973-
Paelopatides24974-
Paelopatides24975AAA DOMAIN-CONTAINING
Paelopatides24976-
Paelopatides24977CYTOCHROME P450 508A4-RELATED
Paelopatides24978CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides24979-
Paelopatides2498060S ACIDIC RIBOSOMAL PROTEIN P0
Paelopatides2498160S ACIDIC RIBOSOMAL PROTEIN P0
Paelopatides2498260S ACIDIC RIBOSOMAL PROTEIN P0
Paelopatides24983BONUS, ISOFORM C-RELATED
Paelopatides24984NUCLEOPORIN AMO1-LIKE
Paelopatides24985BUCENTAUR RELATED
Paelopatides24986ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides24987PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
Paelopatides24989SULFOTRANSFERASE SULT
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