About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides24990PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides24991RETROTRANSPOSON
Paelopatides24992RETROTRANSPOSON
Paelopatides24993SULFOTRANSFERASE SULT
Paelopatides24994POL PROTEIN
Paelopatides24995SULFOTRANSFERASE SULT
Paelopatides24996-
Paelopatides24997REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides24998SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides24999PATCHED-RELATED
Paelopatides25000-
Paelopatides25001-
Paelopatides25002-
Paelopatides25003-
Paelopatides25004-
Paelopatides25005-
Paelopatides25006NEPHROCYSTIN-4
Paelopatides25007SLEI FAMILY PROTEIN
Paelopatides25008SPOT14 FAMILY MEMBER
Paelopatides25009EPITHELIAL-STROMAL INTERACTION PROTEIN 1
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