About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25364-
Paelopatides25365VESICLE PROTEIN SORTING-ASSOCIATED
Paelopatides25366-
Paelopatides25367RETROTRANSPOSON
Paelopatides25368LEUCOKININ RECEPTOR-RELATED
Paelopatides25369THREE PRIME REPAIR EXONUCLEASE 1, 2
Paelopatides25370-
Paelopatides25371NETRIN RECEPTOR UNC5
Paelopatides25372ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25373-
Paelopatides25374SI:CH211-108C17.2-RELATED-RELATED
Paelopatides25375-
Paelopatides25376DUF4605 DOMAIN-CONTAINING PROTEIN
Paelopatides25377GENERAL VESICULAR TRANSPORT FACTOR P115
Paelopatides25378-
Paelopatides25379FI21293P1
Paelopatides25380UNCHARACTERIZED
Paelopatides25381HEAT SHOCK 70 KDA PROTEIN 14
Paelopatides25382-
Paelopatides25383-
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