About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25299PROTEIN CBG26694
Paelopatides25300-
Paelopatides25301ZGC:195170
Paelopatides25302ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25303ENDONUCLEASE
Paelopatides25304-
Paelopatides25305ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25306-
Paelopatides25307OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides25309-
Paelopatides25310-
Paelopatides25311PROTEIN CBG26694
Paelopatides25313NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNIT
Paelopatides25314PROTEIN CBG26694
Paelopatides25315ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25316-
Paelopatides25317-
Paelopatides25318NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides25319-
Paelopatides25322PROTEIN CBG26694
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