About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25576-
Paelopatides25577PROTEIN CBG26694
Paelopatides25578ENZYMATIC POLYPROTEIN-RELATED
Paelopatides25579REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25580ADHESION G-PROTEIN COUPLED RECEPTOR
Paelopatides25581ADHESION G-PROTEIN COUPLED RECEPTOR
Paelopatides25582EPM2A-INTERACTING PROTEIN 1
Paelopatides25583-
Paelopatides25584BTK-BINDING PROTEIN-RELATED
Paelopatides255851-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
Paelopatides25586-
Paelopatides25587PROTEIN CBG26694
Paelopatides25588PROTEIN CBG26694
Paelopatides25589-
Paelopatides25590POL PROTEIN
Paelopatides25591ENDONUCLEASE-RELATED
Paelopatides25592PROTEIN CBG26694
Paelopatides25594ENZYMATIC POLYPROTEIN-RELATED
Paelopatides25595PROTEIN CBG26694
Paelopatides25596HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED
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