About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25597POL PROTEIN
Paelopatides25598FAT ATYPICAL CADHERIN-RELATED
Paelopatides25599FAT ATYPICAL CADHERIN-RELATED
Paelopatides25600CADHERIN-23
Paelopatides25604PROTEASOME SUBUNIT ALPHA/BETA
Paelopatides25605LEUCINE RICH REPEAT FAMILY PROTEIN
Paelopatides25606ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides25607UNCHARACTERIZED
Paelopatides25608GAMETOGENETIN-BINDING PROTEIN 2
Paelopatides25609-
Paelopatides25610-
Paelopatides25611-
Paelopatides25612PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides25615NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides25616-
Paelopatides25617GAG-RELATED PROTEIN
Paelopatides25618GAG-RELATED PROTEIN
Paelopatides25619NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides25620CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Paelopatides25621LEUCOKININ RECEPTOR-RELATED
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