About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25740-
Paelopatides25741SERINE-THREONINE PROTEIN KINASE
Paelopatides25742REVERSE TRANSCRIPTASES
Paelopatides25743ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25744REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25745-
Paelopatides25746SULFATE TRANSPORTER
Paelopatides25747ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25750PIRIN-RELATED
Paelopatides25751-
Paelopatides25752-
Paelopatides25753-
Paelopatides25754PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25755TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides25756ENZYMATIC POLYPROTEIN-RELATED
Paelopatides25757ENDONUCLEASE-RELATED
Paelopatides25758-
Paelopatides25759ZINC FINGER PROTEIN
Paelopatides25760REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25761REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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