About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25762ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25763ENZYMATIC POLYPROTEIN-RELATED
Paelopatides25764GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides25765POL PROTEIN
Paelopatides25766POL PROTEIN
Paelopatides25767-
Paelopatides25768-
Paelopatides25769HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides25770-
Paelopatides25771STEROID RECEPTOR RNA ACTIVATOR 1
Paelopatides25772RAD50
Paelopatides25773RAD50
Paelopatides25774UNCHARACTERIZED
Paelopatides25775DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Paelopatides25776UNCHARACTERIZED
Paelopatides25777THO2 PROTEIN
Paelopatides25778-
Paelopatides25779MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides25781NEUROCHONDRIN
Paelopatides25782NEUROCHONDRIN
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