About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25688-
Paelopatides25689CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25690RIBULOKINASE
Paelopatides25691TRIMERIC INTRACELLULAR CATION CHANNEL
Paelopatides25692OXIDOREDUCTASE-RELATED
Paelopatides25693RETINOL DEHYDROGENASE-RELATED
Paelopatides25695RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED
Paelopatides25696DNA HELICASE RECQ FAMILY MEMBER
Paelopatides25697ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25698-
Paelopatides25699STERILE20-LIKE KINASE, ISOFORM B-RELATED
Paelopatides25700RETROTRANSPOSON
Paelopatides25701REVERSE TRANSCRIPTASES
Paelopatides25702ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25703-
Paelopatides25704DNA POLYMERASE
Paelopatides25705-
Paelopatides25706SPORE COAT PROTEIN SP85
Paelopatides25707-
Paelopatides25708TRANSPOSON
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