About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25709-
Paelopatides25710ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25711PROTEIN CBG26694
Paelopatides25712N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides25713-
Paelopatides25714-
Paelopatides25715REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25716-
Paelopatides25720DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides25721ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25722EXPRESSED PROTEIN
Paelopatides25723PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25727POL PROTEIN
Paelopatides25728ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25729ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25730ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Paelopatides25731PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25736TRANSAMIDASE
Paelopatides25738GAG-RELATED PROTEIN
Paelopatides25739-
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