About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25824-
Paelopatides25825PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
Paelopatides25827REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25828L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides25829FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25830-
Paelopatides25831PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25832OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides25833OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides25834ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides25835-
Paelopatides25836-
Paelopatides25837FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25838-
Paelopatides25839FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25841PHOSPHATASE WITH HOMOLOGY TO TENSIN
Paelopatides25842TRANSCRIPTION FACTOR ONECUT
Paelopatides25843TRANSCRIPTION FACTOR ONECUT
Paelopatides25844-
Paelopatides25845ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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