About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25870-
Paelopatides25871PHOSPHOACETYLGLUCOSAMINE MUTASE
Paelopatides25872PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides25873-
Paelopatides25875L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides25876FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25877RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides25878RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides25879RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides25880FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides25881-
Paelopatides25883RING FINGER PROTEIN-RELATED
Paelopatides25884L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides25885PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25886-
Paelopatides25887CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25888CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25889REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25890-
Paelopatides25891-
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