About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25892PKSB
Paelopatides25893PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25894L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides25895MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides25896REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25897BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides25898DC12-RELATED
Paelopatides25899RIBONUCLEASE III
Paelopatides25900REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25901-
Paelopatides25902-
Paelopatides25903-
Paelopatides25904-
Paelopatides25905PROTEIN CBG26694
Paelopatides25906ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides25907PROTEIN CBG26694
Paelopatides25908-
Paelopatides25909DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Paelopatides25910NUCLEAR HORMONE RECEPTOR
Paelopatides25911REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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