About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides25934REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25936TRANSPOSON
Paelopatides25937REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides25938-
Paelopatides25939FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25940FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides25941CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides25942-
Paelopatides25943PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides25944TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides25945NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides259463-KETODIHYDROSPHINGOSINE REDUCTASE
Paelopatides25947PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides259483-KETODIHYDROSPHINGOSINE REDUCTASE
Paelopatides25949DRAB5-RELATED
Paelopatides25950NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3
Paelopatides25951HISTONE H2A
Paelopatides25952-
Paelopatides25953-
Paelopatides25954REVERSE TRANSCRIPTASE
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