About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides26978SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides26979REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26980EXPRESSED PROTEIN
Paelopatides26981-
Paelopatides26982E3 UBIQUITIN-PROTEIN LIGASE E3D FAMILY MEMBER
Paelopatides26984-
Paelopatides26985ZGC:195170
Paelopatides26987NXPE FAMILY MEMBER
Paelopatides26989REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides26990ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides26991INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides26992-
Paelopatides26993CYTOCHROME P450 FAMILY 3
Paelopatides26994CYTOCHROME P450 FAMILY 3
Paelopatides26996PROTEIN CBG26694
Paelopatides26997TRANSPOSASE, PUTATIVE-RELATED
Paelopatides26998PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides26999-
Paelopatides27000GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides27001-
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