About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27475MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
Paelopatides27476-
Paelopatides27477ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides27478BONUS, ISOFORM C-RELATED
Paelopatides27480-
Paelopatides27481ZINC FINGER PROTEIN
Paelopatides27482PROTEIN CBG26694
Paelopatides27483-
Paelopatides27484DETERIN
Paelopatides27485-
Paelopatides27486SOLEUCYL-TRNA SYNTHETASE
Paelopatides27487SOLEUCYL-TRNA SYNTHETASE
Paelopatides27488-
Paelopatides27489LIM DOMAIN-CONTAINING PROTEIN
Paelopatides27490FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides27491-
Paelopatides27492FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides27493ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27494EPM2A-INTERACTING PROTEIN 1
Paelopatides27495EPM2A-INTERACTING PROTEIN 1
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