About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27516POL PROTEIN
Paelopatides27517-
Paelopatides27518PARANEOPLASTIC ANTIGEN
Paelopatides27519DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides27520-
Paelopatides27521-
Paelopatides27528DOMON DOMAIN-CONTAINING PROTEIN FRRS1L
Paelopatides27529PLATELET-DERIVED GROWTH FACTOR
Paelopatides27531REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides27532-
Paelopatides27533CYTOKINE RECEPTOR
Paelopatides27534PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
Paelopatides27535-
Paelopatides27536-
Paelopatides27538-
Paelopatides27539-
Paelopatides27540-
Paelopatides27541ZGC:195170
Paelopatides27542HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides27543VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
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