About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27353CYTOCHROME P450 508A4-RELATED
Paelopatides27354GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Paelopatides27355GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2
Paelopatides27356-
Paelopatides27357RIBONUCLEASE
Paelopatides27358REVERSE TRANSCRIPTASES
Paelopatides27359PROTEIN CBG26694
Paelopatides27360DNA2/NAM7 HELICASE FAMILY MEMBER
Paelopatides27361-
Paelopatides27362CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27363BONUS, ISOFORM C-RELATED
Paelopatides27364BONUS, ISOFORM C-RELATED
Paelopatides27365ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27366TETRASPANIN
Paelopatides27367RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides27368CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides27370NOTCH LIGAND FAMILY MEMBER
Paelopatides27371-
Paelopatides27372UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN
Paelopatides27373WD REPEAT DOMAIN 60
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