About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27564HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides27565-
Paelopatides27566TRANSPOSABLE ELEMENT-RELATED
Paelopatides27567DRAXIN
Paelopatides27568-
Paelopatides27569-
Paelopatides27570CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27571CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27572FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides27573-
Paelopatides27574SAM DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27575NUCLEOPORIN NUP188 HOMOLOG
Paelopatides27576EPM2A-INTERACTING PROTEIN 1
Paelopatides27577RETROTRANSPOSON
Paelopatides27578ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides27579REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides27580GLUTATHIONE PEROXIDASE
Paelopatides27581RGS-GAIP INTERACTING PROTEIN GIPC
Paelopatides27582RGS-GAIP INTERACTING PROTEIN GIPC
Paelopatides27583DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
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