About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27775CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54
Paelopatides27776CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54
Paelopatides27777HIGH MOBILITY GROUP B PROTEIN 4-RELATED
Paelopatides27778PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides27779-
Paelopatides27780N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Paelopatides27781BRAIN PROTEIN I3
Paelopatides27782EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides27784BRAIN PROTEIN I3
Paelopatides2778539S RIBOSOMAL PROTEIN L12
Paelopatides27786ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides27787-
Paelopatides27788-
Paelopatides27789PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides27790REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides27791LAMIN TAIL DOMAIN-CONTAINING PROTEIN 1
Paelopatides27792EPM2A-INTERACTING PROTEIN 1
Paelopatides27793RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides27794-
Paelopatides27795-
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