About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27644PROTEIN CBG26694
Paelopatides27645ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27646CONDENSIN
Paelopatides27648PROTEIN O-MANNOSYL-TRANSFERASE TMTC2
Paelopatides27649-
Paelopatides27652POLYCOMB GROUP PROTEIN
Paelopatides27653RIBOSOME BIOGENESIS PROTEIN
Paelopatides27654CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides27655CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides27656WHEY ACDIC PROTEIN WAP
Paelopatides27657PROTEIN CBG26694
Paelopatides27658REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides27659UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE
Paelopatides27660-
Paelopatides27661TESTICULAR SOLUBLE ADENYLYL CYCLASE
Paelopatides27662-
Paelopatides27663RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides27664ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27665SODIUM/HYDROGEN EXCHANGER
Paelopatides27666-
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