About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27796ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides27797REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides27798ELFLESS, ISOFORM B
Paelopatides27799RHO FAMILY GTPASE
Paelopatides27800ENDONUCLEASE-RELATED
Paelopatides27801POL PROTEIN
Paelopatides27802-
Paelopatides27805AP-5 COMPLEX SUBUNIT SIGMA-1
Paelopatides27806CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
Paelopatides27807CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides27808-
Paelopatides27809REVERSE TRANSCRIPTASE
Paelopatides27810-
Paelopatides27811DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides27816ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides27817-
Paelopatides27818PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
Paelopatides27819S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN
Paelopatides27820TRANSPOSON
Paelopatides27821TRANSFERRIN
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