About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27688ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides27689-
Paelopatides27690ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL
Paelopatides27693-
Paelopatides27696ALKALINE PHOSPHATASE
Paelopatides27698-
Paelopatides27699-
Paelopatides27700-
Paelopatides27701F-BOX ONLY PROTEIN 28
Paelopatides27702TRANSPOSON
Paelopatides27703REVERSE TRANSCRIPTASES
Paelopatides27704-
Paelopatides27705-
Paelopatides27706SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides27707-
Paelopatides27708HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides27709HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides27710HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides27711-
Paelopatides27712DIABLO HOMOLOG, MITOCHONDRIAL
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