About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides278225'-NUCLEOTIDASE-RELATED
Paelopatides27823-
Paelopatides27824-
Paelopatides27825-
Paelopatides27826PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides278292-OXOGLUTARATE DEHYDROGENASE
Paelopatides27830-
Paelopatides27832GTP-BINDING
Paelopatides27833GTP-BINDING
Paelopatides27834SCAVENGER RECEPTOR DOMAIN-CONTAINING
Paelopatides27835-
Paelopatides27836ANKYRIN REPEAT AND MYND DOMAIN-CONTAINING PROTEIN 2
Paelopatides27837S -2-HYDROXY-ACID OXIDASE-RELATED
Paelopatides27838-
Paelopatides27839ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides27840DNA HELICASE RECQ FAMILY MEMBER
Paelopatides27841CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27842CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides27843-
Paelopatides278445'-NUCLEOTIDASE-RELATED
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