About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides27713BCL-2 RELATED
Paelopatides27714C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides27715HYR DOMAIN-CONTAINING PROTEIN
Paelopatides27716FI04643P-RELATED
Paelopatides27717-
Paelopatides27718PROTEIN CBG26694
Paelopatides27719CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides27720PROTEIN CBG26694
Paelopatides27721POL PROTEIN
Paelopatides27722-
Paelopatides27723PROTEIN CBG26694
Paelopatides27724PROTEIN CBG26694
Paelopatides27725-
Paelopatides27726HISTONE H3.2
Paelopatides27727CALICYLIN BINDING PROTEIN
Paelopatides27728CDGSH IRON SULFUR DOMAIN PROTEIN HOMOLOG
Paelopatides27729LIM/HOMEOBOX PROTEIN LHX
Paelopatides27730TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides27731-
Paelopatides27732CXC DOMAIN-CONTAINING PROTEIN-RELATED
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